Three years on from Holmes's fatal fall into the Reichenbach Falls, Watson wrestles with a murder case under his own steam. But who is the enigmatic stranger in the Coroner's court, listening intently to all the evidence? Holmes returns home and explains how he escaped death at Reichenbach, while Moriarty lost his life. Holmes and Watson must now bring a partner of Moriarty's to justice, by proving he is a murderer.

Holmes is called in to investigate a murder. Lady Brackenstall says she saw a gang of men kill her bullying husband, Sir Eustace, but on Holmes's arrival the case seems to have been solved. Holmes is uneasy and returns to the scene of the crime, where he finds things are not as they appear to be. And Watson is curious to hear about the lady's love affair with a sea captain during a long voyage.

Holmes is asked by the country's Prime Minister to aid in the recovery of a stolen diplomatic letter, which, if published, might lead England into war.

An obscure family document containing an enigmatic ritual holds the key to a hidden treasure if Holmes can decipher the mystery.

Neville St Clair works in the City of London and is a man of very regular and respectable habits. One day, his wife goes into town for lunch and is shocked to see her husband in the window of an opium den. That evening, he fails to return home, and Mrs St Clair decides to consult Holmes.

The Duke of Holdernesse needs Holmes's help when his son, Lord Arthur Saltire, is kidnapped from the Priory School. Holmes finds the connection between an old mystery and a teacher who has also gone missing.

Holmes is curious about a series of attacks on figures of the French Emperor Napoleon Bonaparte around London. One such incident leads to a violent death, and he investigates. Lestrade sees an Italian connection and proposes to focus Scotland Yard's attention on the Italian quarter of London, but Holmes is more interested in Chiswick.

In a remote area of Dartmoor, The Silver Blaze, England's most famous and valuable racehorse, goes missing, the dead body of the horse's trainer is found, and sheep are savaged. The Police seem bewildered, but then they charge Fitzroy Stephen, a famous figure in the racing world, with the murder. Holmes is called in to trace the missing horse and finds he has to separate fact from fiction.

On a visit to Wisteria Lodge, Scott Eccles gets a strange reception. A mysterious note arrives for his host, Garcia, and the next morning Garcia and his servants have vanished without trace. Eccles consults Holmes, who decides to treat the case as a murder investigation, but it appears that Holmes and Watson are on a wild goose chase.

The body of one Cadogan West is found in an underground tunnel near Aldgate Station, with his skull smashed, and Holmes is puzzled by the interest his brother Mycroft is showing in the case. Mycroft explains that the top secret plans for a new submarine were in the dead man's pocket, but three of the ten pages were missing when the body was found. Mycroft, on behalf of the British Government, asks his brother to find the missing pages.

Sir Charles Baskerville is found dead on Dartmoor, with his face contorted in terror and the footprints of a huge dog near his body. On arrival in England, Sir Charles's American heir, now Sir Henry Baskerville, engages Holmes to come to Devon and get to the bottom of the age-old legend of the Hound of the Baskervilles - a phantom which kills.From the outset, Holmes is convinced there is a human murderer at work and he lays a deep plan to foil him.