The series picks up four years after the events of Terminator 2: Judgment Day with John and Sarah Connor trying to stay under-the-radar from the government, as they plot to destroy the computer network, Skynet, in hopes of preventing Armageddon.

Sonic, Sonia, and Manic are the children of Queen Aleena Hedgehog, the rightful ruler of Mobius, and are pursued relentlessly by Doctor Robotnik and his bumbling bounty hunters sidekicks, Sleet and Dingo. As infants, the siblings were separated and placed in hiding to fulfill a prophecy made by the Oracle of Delphius that the triplets would grow up to find their estranged mother, overthrow Robotnik, and take their places once more as Mobius' rightful rulers.

MegaTokyo 2033: Tokyo was left flattened as a result from a great earthquake.

A new city, MegaTokyo, was then recreated due in no small part from the aid of a multi-million dollar company, Genom Corp. Genom created and mass-produced biomechanical creatures called Boomers to aid in the restoration of MegaTokyo.

When the Boomers began to run out of control, the ADPolice at first tried to stop them, but they proved to be far more difficult to deal with than was first imagined.

Under the ever looming Boomer threat, a group of four girls from varying degrees of society banded together. Calling themselves The Knight Sabers, they were the only ones with enough firepower and resourcefullness to defend the fledgling MegaTokyo from Genom and it's berserk Boomers.

Sonic, Tails, Princess Sally, and a band of freedom fighters battle to overthrow Dr. Robotnik, a despotic dictator who conquered their home planet Mobius years ago, and rules it as a polluted industrial dystopia.