The crew members arrive at the Guantanamo Bay military base to collect food, fuel and medical supplies. When they come under attack by escaped Gitmo prisoners, they team up with a gruff private contractor to push back against the offensive.

Chandler's leadership is put to the test when the ship's propulsion system is in danger of breaking down, the crew becomes overworked and exhausted, and Dr. Scott could potentially lose all of her research on the virus.

After returning from the horrors of Nicaragua, panic begins to spread throughout the ship when Lt. Danny Green comes down with a mysterious illness that could be the virus. Losing faith in Rachel and her failing vaccine trials, Chandler now has to deal with a restive crew. If he fails to keep the crew together, the whole mission is in jeopardy.

After picking up a distress call near Jamaica, Chandler and a small team stage a rescue attempt. But a surprise attack leave Chandler and Tex stranded at sea. Slattery and the crew search desperately to find their lost at sea Captain and his comrade, hoping to do so before their enemies beat them to it.

With Chandler and Tex caught in a dangerous situation, Slattery has to step into the role as commanding officer. Torn between a mission with the fate of the world at stake and a Captain (and friend) in danger, Slattery has to find a way to get his people back without losing the most important asset: the vaccine prototype.

Rachel and Chandler ask for six volunteers to participate in human trials of her vaccine, but the tests could be a living hell as the virus and the vaccine do battle inside their bodies. Meanwhile back in the States, Chandler’s wife and father are doing everything they can to keep their family alive.

Chandler and his crew finally returns home, where a former D.C. power player is fending off a dangerous warlord who threatens her hopes of restoring law and order in society. Now with a location and a means to finalize their mission, Chandler sets out to save his dying family, only to discover something absolutely terrifying about this brave new world.

After the horrifying revelations and reversals of fortune in Baltimore, Chandler and his fractured team join forces with an underground resistance in an attempt to defeat Amy Granderson. With doses of the cure running low, Rachel tries to do some good for the sick while remaining a prisoner at Avocet. Meanwhile, Slattery and the crew of Nathan James are in a race against time to save an injured Dr. Tophet and regain control of their ship.

After the horrifying revelations and reversals of fortune in Baltimore, Chandler and his fractured team join forces with an underground resistance in an attempt to defeat Amy Granderson. With doses of the cure running low, Rachel tries to do some good for the sick while remaining a prisoner at Avocet. Meanwhile, Slattery and the crew of Nathan James are in a race against time to save an injured Dr. Tophet and regain control of their ship.

Nathan James returns home to Norfolk on a mission. With his family now safely aboard the James, Chandler sends his crew in search of their friends and loved ones.

The crew of Nathan James discovers that hospital ship USNS Solace was sent to sea to wait for Dr. Scott's cure. Captain Chandler sees an opportunity to add another ship to their fleet while Rachel is eager to find a lab better equipped to replicate the vaccine. When Solace fails to respond to radio communications, Chandler and his team board the ship...and come face-to-face with an unexpected enemy.

Chandler tracks a new threat to Northern Florida. Meanwhile, Rachel comes across a secret formula that her mentor, Dr. Hunter, had been perfecting.

With Dr. Scott on the verge of a breakthrough, Chandler and his team set out to land in search of much needed supplies and materials for her lab.

Rachel is hard at work on a new, more efficient version of the cure while Alisha decodes a message found on a recovered cell phone.

After a message is broadcast implicating the Navy in a devastating disaster, Chandler looks to infiltrate the network and regain the trust of the American people.

Nathan James finds itself trapped between the submarine and civilian blockades.

With their mission now fully dedicated to spreading the cure, Nathan James puts a call out to civilians to meet at pre-selected ports across the country.

CNO Tom Chandler is sent to Asia to investigate a possible mutation of the Red Flu. Captain Slattery and his crew deliver cure to Southeast Asia but there may be an unexpected threat in the region.

Chandler must find a way to return to his old crew and investigate a dangerous new foe.

Chandler and crew race to find answers in an Asian Dodge City. Slattery begins to unravel the truth about his troubling predicament.

Chandler must confront his suspected new foe. Slattery learns more about the supposed virus mutation. Pressure mounts on President Michener as the situation worsens.

Chandler's mission becomes complicated as his position is worsened. President Michener faces pressure from the regional leaders.

Chandler's mission comes to a head as he prepares the final part of his plan. President Michener ponders the fate of his presidency.

It is all out war as Chandler must face his fears and confront the greatest threat he has ever encountered.