Now that Nathan’s ability has been revealed and he has lost control of his operation, he and Claire go into hiding in Mexico. With Emile Danko now in control of the government operation, his plan to destroy everyone with abilities is set into motion as he teams up with an unlikely partner. Meanwhile, Angela and Peter seek refuge in a church and begin to mend their broken relationship.

Under Samuel’s guidance, Sylar starts on a path to rediscover his true identity. Hiro helps Emma accept and understand the great possibilities that go along with having an ability. Meanwhile, Peter enlists HRG to help him find a healer who can save Hiro’s life.

Claire is determined to get to the bottom of the Sorority Rush attacks on her own, until H.R.G. intervenes only to realize he may be the source of her troubles. Meanwhile, Peter's new ability is a perfect fit for his job and gives him the opportunity to help Emma accept her new life. Elsewhere, Sylar's battle at gaining full control over Matt's body escalates with potentially dangerous implications at stake.