Irma is kidnapped by Bebop and Rocksteady and is replaced by a robot that looks just like her that is programmed to eliminate the turtles.

The Turtles must clear their names when they are believed to be jewel thieves who stole a priceless emerald during a magic act run by a wizard named Boldini.

Zach and his brother Walt visit the Turtles. As they leave, Walt takes a map that could guide Shredder to the lair if it happens to fall into the wrong hands.

Shredder tries to trick the Turtles into eating cookies made with anti-mutagen. Michaelangelo, wanting to be a human, tries one of the cookies and it mutates him into a teenager.

Kala's pet Grybyx, which has a really bad temper whenever it gets hungry, escapes from Dimension X through a portal to Earth, causing trouble for the Turtles.

While searching for a device to transform crude oil into liquid hydrogen, Krang accidentally brings Mr. Ogg from Dimension Z to earth.

The Turtles are frustrated that they let Shredder slip away from them again. They feel like giving up, and wish they had never been born.

An interdimensional alien spacecraft leads Baxter Stockman to his latest vengeful plot to destroy the Turtles and Shredder.

After several failed attempts to get the Technodrome re-energized, Shredder and Krang run one last-ditch distraction for the Turtles at Fort Charles while Bebop and Rocksteady steal energy fuel cells from the neighboring space research center.

The Technodrome is up and running again, and it is up to the Turtles to hinder Shredder and Krang from getting to the surface.

After several setbacks, Shredder and Krang steal all of New York's electricity and charge it into a giant transdimensional gateway, designed to send Earth into Dimension X. The Turtles must defeat their enemies once and for all before Earth is destroyed by Krang's Rock Soldier army.

With the Technodrome in serious need for new equipment, Bebop and Rocksteady are sent to Earth, disguised in human form, to capture the Channel 6 building and return it to Dimension X.